Publications
Explore the list of manuscripts, books and book chapters, theses, and dissertations from the data and samples collected aboard Nautilus.
2018
(2018). Models of habitat suitability, size, and age-class structure for the deep-sea black coral Leiopathes glaberrima in the Gulf of Mexico. Deep Sea Research II 150: 218-228.
(2018). Exploring deep-water coral communities using environmental DNA. Deep Sea Research II 150: 229-241.
(2018). Long-term impact of the Deepwater Horizon oil spill on deep-sea corals detected after seven years of monitoring. Biological Conservation 225: 117-`127.
(2018). Projecting the recovery of a long‐lived deep‐sea coral species after the Deepwater Horizon oil spill using state‐structured models. Journal of Applied Ecology 55(4): 1812-1822.
(2018). In situ Observations of the Meso-Bathypelagic Scyphozoan, Deepstaria enigmatica (Semaeostomeae: Ulmaridae). American Museum Novitates 3900: 1-14.
(2018). Depth-dependent temperature variability in the Southern California Bight with implications for survival of the cold-water gorgonian octocoral Adelogorgia phyllosclera. MS Thesis: University of Charleston https://www.proquest.com/dissertations-theses/depth-depende…
(2018). Investigating the Complex Association Between Viral Ecology, Environment, and Northeast Pacific Sea Star Wasting. New Frontiers in Marine Science 5: 77.
(2018). Tubular Nontronite-Bearing Hydrothermal Deposits from a Galapagos Seamount. Deep Sea Research II 150: 181-194. https://doi.org/10.1016/j.dsr2.2017.09.017
(2018). Faunal and stable carbon isotopic analyses of benthic foraminifera from the Southeast cold seep on Kimki Ridge offshore southern California, USA. Deep Sea Research II 150: 92-117.
(2018). In situ Carbon Isotopic Exploration of an Active Submarine Volcano. Deep Sea Research II 150: 57-66.
(2018). Complementary acoustic and optical methods for characterization of diffuse venting, gas seeps, and biota distributions at hydrothermal systems: A case study at Kick’em Jenny Volcano. Deep Sea Research II 150: 67-81.
(2018). Oxygen minimum zone baseline transects for paleoceanographic reconstructions in Santa Barbara Basin, CA. Deep Sea Research II 150: 118-131.
(2018). Characterizing the deep-sea sponge grounds of Grays Canyon, Washington. Deep Sea Research II 150: 146-155.
(2018). New Frontiers in Ocean Exploration: The E/V Nautilus, NOAA Ship Okeanos Explorer, and R/V Falkor 2017 Field Season. Oceanography 31: 126. https://doi.org/10.5670/oceanog.2018.supplement.01
(2018). Four new species of Hexactinellida (Porifera) and a name replacement from the NE Pacific. ZooTaxa 4466(1): 124-151.
(2018). Deep-sea hydrothermal vents as natural egg-case incubators at the Galapagos Rift. Nature 8(1): 1788.
(2018). Petrogenesis of Alkalic Seamounts in the Galapagos Islands. Deep Sea Research II 150: 170-180.
(2018). Heterogeneity of methane seep biomes in the Northeast Pacific. Deep Sea Research II 150: 195-209.
(2018). Sycamore Knoll: A wave-planed pop-up structure in a sinistral-oblique thrust system, Southern California Continental Borderland. Deep Sea Research II 150: 132-145.
(2018). Incidence of disturbance and damage to deep-sea corals and sponges in areas of high trawl bycatch near the California and Oregon border. Deep Sea Research II 150: 156-163.
2017
(2017). New Frontiers in Ocean Exploration: The E/V Nautilus, NOAA Ship Okeanos Explorer, and R/V Falkor 2016 Field Season. Oceanography 30: 94. https://doi.org/10.5670/oceanog.2017.supplement.01
(2017). Characterisation of methane-seep communities in a deep-sea area designated for oil and natural gas exploitation off Trinidad and Tobago. Frontiers in Marine Science Special Issue: Anthropogenic Disturbances in Deep Sea. https://doi.org/10.3389/fmars.2017.00342
(2017). Demersal fish assemblages on seamounts and other rugged features in the northeastern Caribbean. Deep Sea Research 123: 90-104.
(2017). Stress response of the black coral Leiopathes glaberrima when exposed to sub-lethal amounts of crude oil and dispersant. Elementa Science of the Anthropocene 5: 77.
(2017). Implications of deoxygenation and acidification for deep sea urchins in southern California. Dissertation: University of California San Diego https://escholarship.org/uc/item/3ck922b5
(2017). Methane hydrate stability and potential reserves In the Levant basin. MS Thesis: University of Haifa https://www.proquest.com/dissertations-theses/methane-hydra…
2016
(2016). A new species of Pachycara Zugmayer, 1911 (Teleostei: Zoarcidae) from deep-sea chemosynthetic environments in the Caribbean Sea. Zootaxa 4066(1): 71–77.
(2016). New Frontiers in Ocean Exploration: The E/V Nautilus and NOAA Ship Okeanos Explorer 2015 Field Season. Oceanography 29: 84. https://doi.org/10.5670/oceanog.2016.supplement.01
(2016). Quantifying impacts of trawling to shipwrecks. In: Matthew Keith, (ed) Site Formation Processes of Submerged Shipwrecks : 157-178.
(2016). Quantification of bottom trawl fishing damage to ancient shipwreck sites. Marine Geology 371: 82-88.
(2016). Quantification of bottom trawl fishing damage to ancient shipwreck sites. Marine Geology 371: 82-88.
(2016). Hydrothermal Venting and Mineralization in the Crater of Kick'em Jenny Volcano, Grenada (Lesser Antilles). Geochemistry, Geophysics, Geosystems 17(3): 1000-1019.
(2016). Response of deep-water corals to oil and chemical dispersant exposure.. Deep-Sea Research Part II-Topical Studies in Oceanography 129: 137-147.
(2016). Characterizing the effects of anthropogenic disturbance on deep-sea corals of the Gulf of Mexico. Disseratation: Temple University http://dx.doi.org/10.34944/dspace/1268
(2016). Environmental and energetic constraints on cold-water corals. Dissertation: Temple University https://scholarshare.temple.edu/server/api/core/bitstreams/…
(2016). Understanding the role of social media in scientific communications : communication audit of the Bureau of Ocean Energy Management. MS Thesis: Michigan State University https://doi.org/doi:10.25335/cypg-mk32
(2016). Hydrothermal nontronite formation at Seamount No. 3 (Wolf-Darwin Seamount Chain, Galapagos Marine Reserve). BS Thesis: Bates College https://scarab.bates.edu/cgi/viewcontent.cgi?article=1030&c…
(2016). Transforming Undergraduate Research Opportunities using Telepresence. Proceedings of the 23rd International Congress of Sound and Vibration 64(2): 138-146.
(2016). Observations of bubbles in natural seep flares at MC 118 and GC 600 using in situ quantitative imaging. Journal of Geophysical Research 121(4): 2203-2230.
2015
(2015). New Frontiers in Ocean Exploration: The E/V Nautilus 2014 Gulf of Mexico and Caribbean Field Season. Oceanography 28: 60. https://doi.org/10.5670/oceanog.2015.supplement.01
(2015). Bathymetric extent of recent trawl damage to the seabed captured by an ROV transect in the Alboran Sea. Oceanography 28(4): 8-10.
(2015). Distribution of tephra from the 1650 AD submarine eruption of Kolumbo volcano, Greece. MS Thesis: University of Rhode Island https://doi.org/10.23860/thesis-fuller-sarah-2015
(2015). Fishing for Common Ground: Investigations of the impact of trawling on ancient shipwreck sites uncovers a potential for management synergy. Marine Policy 61: 127-133.
(2015). Oceanic detachment faulting and core complex development and evolution: insights from the mid-Cayman spreading center. MS Thesis: University of Wyoming
(2015). Akhziv submarine canyon as a modifier of the regional food-web. Dissertation: University of Haifa
(2015). Seafloor Processes at Kick ‘Em Jenny Volcano, Pre- July 2015 Volcanic Event, using High-Resolution Shipboard and Remotely Operated Vehicle Near-Source Data. MS Thesis: Texas A&M University https://hdl.handle.net/1969.1/161517
(2015). Sedimentology And Geochemistry of Mud Volcanoes in Anaximander Mountain Region From the eastern Mediterranean Sea. Marine Pollution Bulletin 95(1): 63-71.
(2015). A brief look at the Free-living Nematoda of the oxic/anoxic interface with a new genus record (Trefusia) to the Black Sea. Oceanological and Hydrobiological Studies 44(4): 539-551.
(2015). Factor graphs and submap simultaneous localization and mapping for microbathymetry. Dissertation: University of Rhode Island https://doi.org/10.23860/diss-vaughn-james-2015
(2015). Lost fishing gear and litter in the Gorringe Bank (NE Atlantic). Journal of Sea Research 100: 91-98.
(2015). New Insights into the Nature of Debris-Avalanche Deposits Offshore Montserrat using Remotely Operated Vehicles (ROVs). Geochem. Geophys. Geosys. 16(7): 2240-2261.
2014
(2014). Bathymetric terrain model of the Puerto Rico trench and the northeastern Caribbean region for marine geological investigations. U.S. Geological Survey Open-File Report 2013–1125, 10 p., 1 pl. http://dx.doi.org/10.3133/ofr20131125
(2014). New Frontiers in Ocean Exploration: The E/V Nautilus 2013 Gulf of Mexico and Caribbean Field Season. Oceanography 27 (1): 52. https://doi.org/10.5670/oceanog.2014.supplement.01
(2014). Archaeological Oceanography. Encyclopedia of Natural Resources : 604-608. http://www.crcnetbase.com/doi/10.1081/E-ENRW-120047573
(2014). Integrated volcanologic and petrologic analysis of the 1650 AD eruption of Kolumbo submarine volcano. Journal of Volcanological and Geothermal Research 269: 28-43. https://www.sciencedirect.com/science/article/pii/S03770273…
(2014). Cold Seeps Associated with a Submarine Debris Avalanche Deposit at Kick’em Jenny Volcano, Grenada (Lesser Antilles). Deep Sea Research I 93: 156-160. https://www.sciencedirect.com/science/article/abs/pii/S0967…
(2014). Theoretical and Practical Advances in Underwater Regional Archaeological Survey. MS Thesis: University College London
(2014). A new carnivorous sponge, Chondrocladia robertballardi sp. nov. (Porifera: Cladorhizidae) from two northeast seamounts. Journal of the Marine Biological Association of the United Kingdom 95(7): 1345-1352. https://www.cambridge.org/core/journals/journal-of-the-mari…
(2014). Report on E/V Nautilus Cruise NA039 of the Kick 'em Jenny Volcano, Grenada 1-18 November 2013. SRC Open File Report : 1-74.
(2014). Molecular systematics of the deep-sea bamboo corals (Octocorallia: Isididae: Keratoisidinae) from New Zealand with descriptions of two new species of Keratoisis. Molecular Phylogenetics and Evolution 74: 15-28. https://doi.org/10.1016/j.ympev.2014.01.031
(2014). Exploration of the 1891 Foerstner submarine vent site (Pantelleria, Italy): insights into the formation of basaltic balloons. Bulletin of Volcanology 76: 844-862. https://link.springer.com/article/10.1007/s00445-014-0844-4
(2014). Tsunami Hazard Risk of a future volcanic eruption of Kolumbo submarine volcano, NE of Santorini Caldera, Greece. Natural Hazards 72(3): 1375–1390. https://link.springer.com/article/10.1007/s11069-012-0405-0
(2014). The detection of Volcanic Debris Avalanches (VDAs) along the Hellenic Volcanic Arc, using marine geophysical techniques. Submarine Mass Movements and Their Consequences 37: 339-350. https://doi.org/10.1007/978-3-319-00972-8_30
(2014). Hydrocarbon-related microbial processes in the deep sediments of the Eastern Mediterranean Levantine basin. FEMS Microbial Ecology 87(3): 780–796. https://academic.oup.com/femsec/article/87/3/780/578119
(2014). First evidence for the presence of iron oxidizing Zetaproteobacteria at the Levantine continental margins. PLoS ONE 9(3): e91456. https://journals.plos.org/plosone/article?id=10.1371/journa…
(2014). Cold seep biogenic carbonate crust in the Levantine basin is inhabited by burrowing Phascolosoma aff.turnerae, a sipunculan worm hosting a distinctive microbiota. Deep-sea Research I 90(1): 17-26. https://www.sciencedirect.com/science/article/pii/S09670637…
(2014). Distribution of the Lamellibrachia spp. (Sibogilnidae, Annelida) and their trophosome endosymbiont phylotypes in the Mediterranean Sea. Marine Biology 161(6): 1229-1239. https://link.springer.com/article/10.1007/s00227-014-2413-y
(2014). Marine Chemosynthesis in the Mediterranean Sea. In: Goffredo, S., Dubinsky, Z. (eds) The Mediterranean Sea: Its history and present challenges : 69-83. https://link.springer.com/chapter/10.1007/978-94-007-6704-1…
(2014). In situ observation of chimaerid species in the Gorringe Bank: new distribution records for the north-east Atlantic Ocean. Journal of Fish Biology 85(3): 927-932. https://www.jstor.org/stable/43683505
2013
(2013). Submarine evidence of a debris avalanche deposit on the eastern slope of Santorini Volcano, Greece. Tectonophysics 597-598: 147-160. https://doi.org/10.1016/j.tecto.2012.05.006
(2013). New Frontiers in Ocean Exploration: The E/V Nautilus 2012 Field Season and Summary of Mediterranean Exploration. Oceanography 26 (1): 64. https://doi.org/10.5670/oceanog.2013.supplement.01
(2013). High-resolution imaging of the M/S Dodekanisos shipwreck site off Deveboynu Burnu, Turkey. International Journal of Nautical Archaeology 42(1): 204-208. https://doi.org/10.1111/j.1095-9270.2012.00367.x
(2013). Ocean dynamics and anthropogenic impacts along the southern Black Sea shelf examined by the preservation of premodern shipwrecks. Continental Shelf Research 53: 89-101. https://www.sciencedirect.com/science/article/pii/S02784343…
(2013). CO2 Degassing from Hydrothermal Vents at Kolumbo Submarine Volcano, Greece and the Accumulation of Acidic Crater Water. Geology 41(9): 1035-1038. https://doi.org/10.1130/G34286.1
(2013). Notes on a mating event of the deep-sea crab Chaecon affinis in the Gorringe Bank (NE Atlantic). Deep-sea Research II 92: 58-62. https://www.sciencedirect.com/science/article/pii/S09670645…
(2013). Hybrid optical acoustic seafloor mapping. Dissertation: University of Rhode Island https://digitalcommons.uri.edu/oa_diss/64
(2013). Hybrid optical acoustic seafloor mapping. Dissertation: University of Rhode Island
(2013). 1891 AD submarine eruptive processes and geochemical studies of floating scoria at Foerstner volcano, Pantelleria. MS Thesis: University of Rhode Island
(2013). 1891 AD submarine eruptive processes and geochemical studies of floating scoria at Foerstner volcano, Pantelleria. MS Thesis: University of Rhode Island https://doi.org/10.23860/thesis-kelly-joshua-2013
(2013). New insights into hydrothermal vent processes in the unique shallow-submarine arc-volcano, Kolumbo (Santorini), Greece. Nature Scientific Reports 3(1): 2421. https://doi.org/10.1038/srep02421&sa=D&source=editors&ust=1…
(2013). The volcanic debris avalanche on the SE submarine slope of Nisyros volcano, Greece: geophysical exploration and implications for subaerial eruption history. Geo-Marine Letters 33 (6): 419-431. https://doi.org/10.1007/s00367-013-0338-y
(2013). Detailed spectroscopic studies in the aquatic environment using synchrotron radiation. Advances in Nuclear Physics 21: 185-187. https://doi.org/10.12681/hnps.2031
(2013). Morphological analysis and related volcanic features of the Kolumbo submarine volcanic chain (NE of Santorini Island, Aegean Volcanic Arc). Zeitschrift fόr Geomorphologie 57: 29 - 47. https://doi.org/10.1127/0372-8854/2013/S-00142
(2013). Exploring the Avyssos-Yali-Strogyli submarine volcanic complex at the the Avyssos-Yali-Strogyli submarine volcanic complex at the eastern edge of the Aegean Volcanic Arc edge of the Aegean Volcanic Arc. Zeitschrift fόr Geomorphologie 57: 125-137.
(2013). Submarine Volcanoes along the Aegean Volcanic Arc. Tectonophysics 597-598: 123-146. https://www.sciencedirect.com/science/article/pii/S00401951…
(2013). "Niche divergence by deep-sea octocorals in the genus Callogorgia across the continental slope of the Gulf of Mexico". Molecular Ecology 22 (15): 4123-4140. https://doi.org/10.1111/mec.12370
(2013). Genetic connectivity of octocorallia across abiotic gradients in the deep Gulf of Mexico. Dissertation: Temple University http://pqdtopen.proquest.com/#viewpdf?dispub=3623237
(2013). A complex picture of associations between two host mussels and symbiotic bacteria in the Northeast Atlantic. Naturwissenschaften 100: 21-31. http://dx.doi.org/10.1007/s00114-012-0985-2
(2013). Multidisciplinary Study of Microbial Niches at the Deep Benthos of Lavantine Basin. Dissertation: University of Haifa https://www.proquest.com/dissertations-theses/multidiscipli…
(2013). Detection of Diffuse Seafloor Venting Using Structured Light Imaging. MS Thesis: University of Rhode Island https://digitalcommons.uri.edu/theses/32/
(2013). Detection of diffuse seafloor venting using structured light imaging. Geochemistry, Geophysics, Geosystems 14(11): 4743-4757. https://doi.org/10.1002/ggge.20280
(2013). Sedimentological and geochemical properties of mud volcanoes on the Anaximander Seamounts. MS Thesis: Dokuz Eylul University
(2013). Geochemical and isotopic changes in the fumarolic and submerged gas discharges during the 2011–2012 unrest at Santorini caldera (Greece). Bulletin of Volcanology 75 (4): 44576. https://doi.org/10.1007/s00445-013-0711-8
(2013). A new species of Halaphanolaimus (Nematoda: Leptolaimidae) from the southern Black Sea (Turkey) with a modified key for species identification. Zootaxa 3691(2): 220-228. https://mapress.com/zt/article/view/zootaxa.3691.2.2
2012
(2012). New Frontiers in Ocean Exploration: The E/V Nautilus and NOAA Ship Okeanos Explorer 2011 Field Season. Oceanography 25 (1): 68. https://doi.org/10.5670/oceanog.2011.supplement.01
(2012). Evaluation of the modern submarine landscape off southwestern Turkey through the documentation of ancient shipwreck sites. Continental Shelf Research 43: 55-70. https://doi.org/10.1016/j.csr.2012.04.017
(2012). Cultural sites as platforms for environmental characterization of marine landscapes. Dissertation: University of Rhode Island https://digitalcommons.uri.edu/oa_diss/1136/
(2012). Submarine volcanoes of the Kolumbo volcanic zone NE of Santorini Caldera, Greece. Global and Planetary Change 90-91: 135-151. http://www.sciencedirect.com/science/article/pii/S092181811…
(2012). Microbathymetry using self-contained navigation and simultaneous localization and mapping. MS Thesis: University of Rhode Island https://doi.org/10.23860/diss-vaughn-james-2015
2011
(2011). New Frontiers in Ocean Exploration: The E/V Nautilus 2010 Field Season. Oceanography 24: 44. https://doi.org/10.5670/oceanog.24.1.supplement
